U
    )bz                     @   s   d dl Zd dlmZ d dlZd dlmZm	Z	 d dl
mZ d dlmZ d dlmZ dddZddd	Zdd
dZdddZdddZdddZdS )    N)
csr_matrix
coo_matrix)KDTree)cosine	euclideanc                 C   sl   | j \}}|d kr| }|d k	r2t| |||d}|S |dkrLtjj| |}ntjj| |}t| }|S )N)distance_metricnum_topr   )	shapekd_alignsklearnZmetricspairwiseZcosine_similarityZeuclidean_distancesnpexp)embedembed2sim_measurer   n_nodesdimZkd_simsimilarity_matrix r   N/media/warith/TOSHIBA_EXT5/Seagate_Drive/Drug_tools/REGAL-master/alignments.pyget_embedding_similarities	   s    
r   c                 C   sD   |d krt | jd d }| jd }| d | }| |d  }||fS )Nr         )intr	   )Zcombined_embedZgraph_split_idxr   embed1r   r   r   r   get_embeddings   s    
r   c                    sV    d krt t | S dd   D } fdd  D }t | ||f S d S )Nc                 S   s   g | ]}t |qS r   r   .0Znode_g1r   r   r   
<listcomp>.   s     zscore.<locals>.<listcomp>c                    s   g | ]}t  | qS r   r   r   true_alignmentsr   r   r    /   s     )r   sumdiagonalkeys)alignment_matrixr"   Znodes_g1Znodes_g2r   r!   r   score*   s
    r'   Fr   c           
      C   s,   t | ||d}t|||}t|||d}	|	S )N)r   )topkr"   )r   Zget_estimated_alignment_matrixscore_alignment_matrix)
r   r   r(   Zsimilarity_threshold	normalizer"   simr   r&   r'   r   r   r   score_embeddings_matrices3   s    r,   cosinus2   c                 C   s   t ||d}tg }tg }tg }|j| |d\}	}
td tg }t| jd D ]}t|t|| f}q\|
	 }t
|	 	 }t|||ff| jd |jd fd}| S )N)metric)kzqueried alignmentsr   )r	   )r   r   arrayqueryprintranger	   concatenateonesflattenr   r   tocsr)emb1emb2r*   r   r   Zkd_treerowcoldatadistindiZsparse_align_matrixr   r   r   r
   9   s    



$r
   c                 C   s(  | j d }g }|d krR| jdd}d||dk< | |d d tjf  } t| |d}nd}t| sjt| }t|D ]}	|	}
|d k	rt	||	 }
t| rt
| |	 \}}}||  }n||	 }|
|| d  krr|r|d|t||	 |
kd   7 }n|d7 }||	 qr|t| }|t|fS )Nr   r   )axisgư>r!   g      ?)r	   r#   r   newaxisr'   spissparseargsortr4   r   findargwhereappendfloatset)r&   r(   Ztopk_score_weightedr"   r   correct_nodesrow_sumsZalignment_scoresorted_indices
node_indexZtarget_alignmentr;   Zpossible_alignmentsZpossible_valuesZnode_sorted_indicesr   r   r   r)   K   s2    



$r)   )Nr   N)N)N)NNFNr   )Fr-   r.   )NFN)numpyr   Zscipy.ioiosioZsklearn.metrics.pairwiser   scipy.sparser   r   Zsklearn.neighborsr   sparserC   Zscipy.spatial.distancer   r   r   r'   r,   r
   r)   r   r   r   r   <module>   s   


	

