from csv import DictReader import numpy def main(): ppiHuman_idmap_List = {} ppiHuman_id_DGLKE_List = {} pidHuman_idmap_file = '../DATA_KGE/HINT_HUMAN/HomoSapiens_binary_hq.txt' with open(pidHuman_idmap_file) as f: f.__next__() for line in f: it = line.strip().split("\t") p1id = it[0] p2id = it[1] if str(p1id) not in ppiHuman_id_DGLKE_List: ppiHuman_id_DGLKE_List[str(p1id)] = set() ppiHuman_id_DGLKE_List[str(p1id)].add(str(9606)) if str(p2id) not in ppiHuman_id_DGLKE_List: ppiHuman_id_DGLKE_List[str(p2id)] = set() ppiHuman_id_DGLKE_List[str(p2id)].add(str(9606)) if str(p1id) not in ppiHuman_idmap_List: ppiHuman_idmap_List[str(p1id)] = set() ppiHuman_idmap_List[str(p1id)].add(str(p2id)) ppiHuman_Complex_idmap_List = {} ppiHuman_Complex_id_DGLKE_List = {} pidHuman_idmap_file = '../DATA_KGE/HINT_HUMAN/HomoSapiens_cocomp_hq.txt' with open(pidHuman_idmap_file) as f: f.__next__() for line in f: it = line.strip().split("\t") p1id = it[0] p2id = it[1] if str(p1id) not in ppiHuman_Complex_id_DGLKE_List: ppiHuman_Complex_id_DGLKE_List[str(p1id)] = set() ppiHuman_Complex_id_DGLKE_List[str(p1id)].add(str(9606)) if str(p2id) not in ppiHuman_Complex_id_DGLKE_List: ppiHuman_Complex_id_DGLKE_List[str(p2id)] = set() ppiHuman_Complex_id_DGLKE_List[str(p2id)].add(str(9606)) if str(p1id) not in ppiHuman_Complex_idmap_List: ppiHuman_Complex_idmap_List[str(p1id)] = set() ppiHuman_Complex_idmap_List[str(p1id)].add(str(p2id)) ppiMouse_idmap_List = {} ppiMouse_id_DGLKE_List = {} pidMouse_idmap_file = '../DATA_KGE/HINT_MusMusculus/MusMusculus_binary_hq(1).txt' with open(pidMouse_idmap_file) as f: f.__next__() for line in f: it = line.strip().split("\t") p1id = it[0] p2id = it[1] if str(p1id) not in ppiMouse_id_DGLKE_List: ppiMouse_id_DGLKE_List[str(p1id)] = set() ppiMouse_id_DGLKE_List[str(p1id)].add(str(10090)) if str(p2id) not in ppiMouse_id_DGLKE_List: ppiMouse_id_DGLKE_List[str(p2id)] = set() ppiMouse_id_DGLKE_List[str(p2id)].add(str(10090)) if str(p1id) not in ppiMouse_idmap_List: ppiMouse_idmap_List[str(p1id)] = set() ppiMouse_idmap_List[str(p1id)].add(str(p2id)) ppiMouse_Complex_idmap_List = {} ppiMouse_Complex_id_DGLKE_List = {} pidMousecomplex_idmap_file = '../DATA_KGE/HINT_MusMusculus/MusMusculus_cocomp_hq.txt' with open(pidMousecomplex_idmap_file) as f: f.__next__() for line in f: it = line.strip().split("\t") p1id = it[0] p2id = it[1] if str(p1id) not in ppiMouse_Complex_id_DGLKE_List: ppiMouse_Complex_id_DGLKE_List[str(p1id)] = set() ppiMouse_Complex_id_DGLKE_List[str(p1id)].add(str(10090)) if str(p2id) not in ppiMouse_Complex_id_DGLKE_List: ppiMouse_Complex_id_DGLKE_List[str(p2id)] = set() ppiMouse_Complex_id_DGLKE_List[str(p2id)].add(str(10090)) if str(p1id) not in ppiMouse_Complex_idmap_List: ppiMouse_Complex_idmap_List[str(p1id)] = set() ppiMouse_Complex_idmap_List[str(p1id)].add(str(p2id)) ppiDroso_idmap_List = {} ppiDroso_id_DGLKE_List = {} pidDroso_idmap_file = '../DATA_KGE/HINT_DrosophilaMelanogaster/DrosophilaMelanogaster_binary_hq.txt' with open(pidDroso_idmap_file) as f: f.__next__() for line in f: it = line.strip().split("\t") p1id = it[0] p2id = it[1] if str(p1id) not in ppiDroso_id_DGLKE_List: ppiDroso_id_DGLKE_List[str(p1id)] = set() ppiDroso_id_DGLKE_List[str(p1id)].add(str("droso")) if str(p2id) not in ppiDroso_id_DGLKE_List: ppiDroso_id_DGLKE_List[str(p2id)] = set() ppiDroso_id_DGLKE_List[str(p2id)].add(str("droso")) if str(p1id) not in ppiDroso_idmap_List: ppiDroso_idmap_List[str(p1id)] = set() ppiDroso_idmap_List[str(p1id)].add(str(p2id)) ppiDroso_Complex_idmap_List = {} ppiDroso_Complex_id_DGLKE_List = {} pidDroso_complex_idmap_file = '../DATA_KGE/HINT_DrosophilaMelanogaster/DrosophilaMelanogaster_cocomp_hq.txt' with open(pidDroso_complex_idmap_file) as f: f.__next__() for line in f: it = line.strip().split("\t") p1id = it[0] p2id = it[1] if str(p1id) not in ppiDroso_Complex_id_DGLKE_List: ppiDroso_Complex_id_DGLKE_List[str(p1id)] = set() ppiDroso_Complex_id_DGLKE_List[str(p1id)].add(str("droso")) if str(p2id) not in ppiDroso_Complex_id_DGLKE_List: ppiDroso_Complex_id_DGLKE_List[str(p2id)] = set() ppiDroso_Complex_id_DGLKE_List[str(p2id)].add(str("droso")) if str(p1id) not in ppiDroso_Complex_idmap_List: ppiDroso_Complex_idmap_List[str(p1id)] = set() ppiDroso_Complex_idmap_List[str(p1id)].add(str(p2id)) ppiSaccharomycesCerev_idmap_List = {} ppiSaccharomycesCerev_id_DGLKE_List = {} pidSaccharomycesCerev_idmap_file = '../DATA_KGE/HINT_SaccharomycesCerevisiaeS288C/SaccharomycesCerevisiaeS288C_binary_hq.txt' with open(pidSaccharomycesCerev_idmap_file) as f: f.__next__() for line in f: it = line.strip().split("\t") p1id = it[0] p2id = it[1] if str(p1id) not in ppiSaccharomycesCerev_id_DGLKE_List: ppiSaccharomycesCerev_id_DGLKE_List[str(p1id)] = set() ppiSaccharomycesCerev_id_DGLKE_List[str(p1id)].add(str("SaccharomycesCerev")) if str(p2id) not in ppiSaccharomycesCerev_id_DGLKE_List: ppiSaccharomycesCerev_id_DGLKE_List[str(p2id)] = set() ppiSaccharomycesCerev_id_DGLKE_List[str(p2id)].add(str("SaccharomycesCerev")) if str(p1id) not in ppiSaccharomycesCerev_idmap_List: ppiSaccharomycesCerev_idmap_List[str(p1id)] = set() ppiSaccharomycesCerev_idmap_List[str(p1id)].add(str(p2id)) ppiSaccharomycesCerev_Complex_idmap_List = {} ppiSaccharomycesCerev_Complex_id_DGLKE_List = {} pidSaccharomycesCerev_complex_idmap_file = '../DATA_KGE/HINT_SaccharomycesCerevisiaeS288C/SaccharomycesCerevisiaeS288C_cocomp_hq.txt' with open(pidSaccharomycesCerev_complex_idmap_file) as f: f.__next__() for line in f: it = line.strip().split("\t") p1id = it[0] p2id = it[1] if str(p1id) not in ppiSaccharomycesCerev_Complex_id_DGLKE_List: ppiSaccharomycesCerev_Complex_id_DGLKE_List[str(p1id)] = set() ppiSaccharomycesCerev_Complex_id_DGLKE_List[str(p1id)].add(str("SaccharomycesCerev")) if str(p2id) not in ppiSaccharomycesCerev_Complex_id_DGLKE_List: ppiSaccharomycesCerev_Complex_id_DGLKE_List[str(p2id)] = set() ppiSaccharomycesCerev_Complex_id_DGLKE_List[str(p2id)].add(str("SaccharomycesCerev")) if str(p1id) not in ppiSaccharomycesCerev_Complex_idmap_List: ppiSaccharomycesCerev_Complex_idmap_List[str(p1id)] = set() ppiSaccharomycesCerev_Complex_idmap_List[str(p1id)].add(str(p2id)) ppiCeleg_idmap_List = {} ppiCeleg_id_DGLKE_List = {} pidCeleg_idmap_file = '../DATA_KGE/HINT_CaenorhabditisElegans/CaenorhabditisElegans_binary_hq.txt' with open(pidCeleg_idmap_file) as f: f.__next__() for line in f: it = line.strip().split("\t") p1id = it[0] p2id = it[1] if str(p1id) not in ppiCeleg_id_DGLKE_List: ppiCeleg_id_DGLKE_List[str(p1id)] = set() ppiCeleg_id_DGLKE_List[str(p1id)].add(str("Celeg")) if str(p2id) not in ppiCeleg_id_DGLKE_List: ppiCeleg_id_DGLKE_List[str(p2id)] = set() ppiCeleg_id_DGLKE_List[str(p2id)].add(str("Celeg")) if str(p1id) not in ppiCeleg_idmap_List: ppiCeleg_idmap_List[str(p1id)] = set() ppiCeleg_idmap_List[str(p1id)].add(str(p2id)) ppiCeleg_Complex_idmap_List = {} ppiCeleg_Complex_id_DGLKE_List = {} pidCeleg_complex_idmap_file = '../DATA_KGE/HINT_CaenorhabditisElegans/CaenorhabditisElegans_cocomp_hq.txt' with open(pidCeleg_complex_idmap_file) as f: f.__next__() for line in f: it = line.strip().split("\t") p1id = it[0] p2id = it[1] if str(p1id) not in ppiCeleg_Complex_id_DGLKE_List: ppiCeleg_Complex_id_DGLKE_List[str(p1id)] = set() ppiCeleg_Complex_id_DGLKE_List[str(p1id)].add(str("Celeg")) if str(p2id) not in ppiCeleg_Complex_id_DGLKE_List: ppiCeleg_Complex_id_DGLKE_List[str(p2id)] = set() ppiCeleg_Complex_id_DGLKE_List[str(p2id)].add(str("Celeg")) if str(p1id) not in ppiCeleg_Complex_idmap_List: ppiCeleg_Complex_idmap_List[str(p1id)] = set() ppiCeleg_Complex_idmap_List[str(p1id)].add(str(p2id)) ###########################end_new_data##################################" with open("../kogal_kg.tsv", 'w+') as frkg: for i, row in enumerate(ppiHuman_idmap_List): prot_id1 = row protList_id2 = ppiHuman_idmap_List[prot_id1] for p2 in protList_id2: fprot_id1="" fp2="" fprot_id1=str(prot_id1) fp2=str(p2) frkg.writelines("{}\t{}\t{}\n".format(str(fprot_id1), "ppi::Human", str(fp2))) print("ppiHuman_idmap_List") for i, row in enumerate(ppiHuman_Complex_idmap_List): prot_id1 = row protList_id2 = ppiHuman_Complex_idmap_List[prot_id1] for p2 in protList_id2: fprot_id1 = str(prot_id1) fp2 = str(p2) frkg.writelines("{}\t{}\t{}\n".format(str(fprot_id1), "ppi::Human::complex", str(fp2))) print("ppiHuman_Complex_idmap_List") for i, row in enumerate(ppiMouse_idmap_List): prot_id1 = row protList_id2 = ppiMouse_idmap_List[prot_id1] for p2 in protList_id2: fprot_id1 = str(prot_id1) fp2 = str(p2) frkg.writelines("{}\t{}\t{}\n".format(str(fprot_id1), "ppi::Mouse", str(fp2))) print("ppiMouse_idmap_List") for i, row in enumerate(ppiMouse_Complex_idmap_List): prot_id1 = row protList_id2 = ppiMouse_Complex_idmap_List[prot_id1] for p2 in protList_id2: fprot_id1 = str(prot_id1) fp2 = str(p2) frkg.writelines("{}\t{}\t{}\n".format(str(fprot_id1), "ppi::Mouse::complex", str(fp2))) print("ppiMouse_Complex_idmap_List") for i, row in enumerate(ppiDroso_idmap_List): prot_id1 = row protList_id2 = ppiDroso_idmap_List[prot_id1] for p2 in protList_id2: fprot_id1 = str(prot_id1) fp2 = str(p2) frkg.writelines("{}\t{}\t{}\n".format(str(fprot_id1), "ppi::DrosophilaMelanogaster", str(fp2))) print("ppiDroso_idmap_List") for i, row in enumerate(ppiDroso_Complex_idmap_List): prot_id1 = row protList_id2 = ppiDroso_Complex_idmap_List[prot_id1] for p2 in protList_id2: fprot_id1 = str(prot_id1) fp2 = str(p2) frkg.writelines("{}\t{}\t{}\n".format(str(fprot_id1), "ppi::DrosophilaMelanogaster::complex", str(fp2))) print("ppiDroso_Complex_idmap_List") for i, row in enumerate(ppiSaccharomycesCerev_idmap_List): prot_id1 = row protList_id2 = ppiSaccharomycesCerev_idmap_List[prot_id1] for p2 in protList_id2: fprot_id1 = str(prot_id1) fp2 = str(p2) frkg.writelines("{}\t{}\t{}\n".format(str(fprot_id1), "ppi::SaccharomycesCerev", str(fp2))) print("ppiSaccharomycesCerev_idmap_List") for i, row in enumerate(ppiSaccharomycesCerev_Complex_idmap_List): prot_id1 = row protList_id2 = ppiSaccharomycesCerev_Complex_idmap_List[prot_id1] for p2 in protList_id2: fprot_id1 = str(prot_id1) fp2 = str(p2) frkg.writelines("{}\t{}\t{}\n".format(str(fprot_id1), "ppi::SaccharomycesCerev::complex", str(fp2))) print("ppiSaccharomycesCerev_Complex_idmap_List") for i, row in enumerate(ppiCeleg_idmap_List): prot_id1 = row protList_id2 = ppiCeleg_idmap_List[prot_id1] for p2 in protList_id2: fprot_id1 = str(prot_id1) fp2 = str(p2) frkg.writelines("{}\t{}\t{}\n".format(str(fprot_id1), "ppi::CaenorhabditisElegans", str(fp2))) print("ppiCeleg_idmap_List") for i, row in enumerate(ppiCeleg_Complex_idmap_List): prot_id1 = row protList_id2 = ppiCeleg_Complex_idmap_List[prot_id1] for p2 in protList_id2: fprot_id1 = str(prot_id1) fp2 = str(p2) frkg.writelines("{}\t{}\t{}\n".format(str(fprot_id1), "ppi::CaenorhabditisElegans::complex", str(fp2))) print("ppiCeleg_Complex_idmap_List") if __name__ == '__main__': main()